uk.ac.cam.spectra.nmr
Class JCampDX

java.lang.Object
  uk.ac.cam.spectra.nmr.JCampDX

All Implemented Interfaces:

java.io.Serializable, uk.ac.cam.spectra.DataFileType

public class JCampDX
extends java.lang.Object
implements uk.ac.cam.spectra.DataFileType

SPECTRa data file type bean for handling JCampDX files. Uses the sourceforge jcamp-dx library for parsing JCampDX and classes from bioclipse to conversion to CML. The metadata extraction is homespun and based on regular expressions.

Author:

ojd20

See Also:

Serialized Form

Constructor Summary

JCampDX()

Method Summary

java.lang.String	convertName(java.lang.String fileName)
com.hp.hpl.jena.rdf.model.Model	extractMetadata(java.io.File jcampFile, java.lang.String packageUri)
java.lang.String	getMimeType()
void	init()
org.jcamp.spectrum.Spectrum	parseAndValidate(uk.ac.cam.spectra.DataProcess process)
void	process(uk.ac.cam.spectra.DataProcess process) Simple implementation, steps are currently independent.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

JCampDX

public JCampDX()

Method Detail

init

public void init()

parseAndValidate

public org.jcamp.spectrum.Spectrum parseAndValidate(uk.ac.cam.spectra.DataProcess process)

extractMetadata

public com.hp.hpl.jena.rdf.model.Model extractMetadata(java.io.File jcampFile,
                                                       java.lang.String packageUri)

convertName

public java.lang.String convertName(java.lang.String fileName)

Specified by:

convertName in interface uk.ac.cam.spectra.DataFileType

getMimeType

public java.lang.String getMimeType()

Specified by:

getMimeType in interface uk.ac.cam.spectra.DataFileType

process

public void process(uk.ac.cam.spectra.DataProcess process)

Simple implementation, steps are currently independent.

Specified by:

process in interface uk.ac.cam.spectra.DataFileType