A B C D E F G H I L N P Q R S T U V W

A

add(DataFile) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
addCustomSpringConfig(String, ConfigurableWebApplicationContext) - Method in class uk.ac.cam.spectra.spectrasub.servlet.SpectraContextLoader
Adds the custom spring-beans file to the Spring config if it exists
addDataFile(DataFile) - Method in class uk.ac.cam.spectra.spectrasub.Profile
 
addMetadata(Model, Combine) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
AddMetadata - Class in uk.ac.cam.spectra.spectrasub.pages
 
AddMetadata() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
AddMetadataValidationDelegate - Class in uk.ac.cam.spectra.spectrasub.pages
 
AddMetadataValidationDelegate() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.AddMetadataValidationDelegate
 
allowSubmit() - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
If the add more chemist link has been clicked, stop the submission.
allowSubmit() - Method in interface uk.ac.cam.spectra.spectrasub.components.Formlet
 
allowSubmit() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
This component has no reason to block submission.
append(Document) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
archive(File, File) - Method in class uk.ac.cam.spectra.spectrasub.DSpaceMETSPackager
 
archive(DataPackage, File) - Method in class uk.ac.cam.spectra.spectrasub.DSpaceMETSPackager
 

B

BaseSPECTRaSubPage - Class in uk.ac.cam.spectra.spectrasub.pages
 
BaseSPECTRaSubPage() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.BaseSPECTRaSubPage
 
BaseSubmissionPage - Class in uk.ac.cam.spectra.spectrasub.pages
 
BaseSubmissionPage() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.BaseSubmissionPage
 
Border - Class in uk.ac.cam.spectra.spectrasub.components
 
Border() - Constructor for class uk.ac.cam.spectra.spectrasub.components.Border
 
bounceContext(WebContext) - Method in class uk.ac.cam.spectra.spectrasub.servlet.SpectraContextLoader
 
buildPackage(DataPackage) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
Sealing the package prepares the package for submission to the repository.

C

cancel() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
Check - Class in uk.ac.cam.spectra.spectrasub.pages
 
Check() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.Check
 
checkAndReconfigure(ServletContext) - Method in class uk.ac.cam.spectra.spectrasub.servlet.SpectraContextLoader
 
checkAndReconfigure(String, AbstractApplicationContext) - Method in class uk.ac.cam.spectra.spectrasub.servlet.SpectraContextLoader
 
checkAndReconfigure(WebContext) - Method in class uk.ac.cam.spectra.spectrasub.servlet.SpectraContextLoader
 
clearSubmissionBlock() - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
clearSubmissionBlock() - Method in interface uk.ac.cam.spectra.spectrasub.components.Formlet
This method will be called after the form handling has taken account of this formlets need to block submission, the formlet should clear whatever state it holds for blocking submisison.
clearSubmissionBlock() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
CONFIG_PROPERTY_FILENAME - Static variable in class uk.ac.cam.spectra.spectrasub.Constants
 
Configuration - Class in uk.ac.cam.spectra.spectrasub
A bean carrying all the properties needed by the front end of the system (the ones at the back end can be injected directly into the relevant beans).
Configuration() - Constructor for class uk.ac.cam.spectra.spectrasub.Configuration
 
ConfigurationComplete - Class in uk.ac.cam.spectra.spectrasub.pages
 
ConfigurationComplete() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.ConfigurationComplete
 
ConfigurationException - Exception in uk.ac.cam.spectra.spectrasub
 
ConfigurationException() - Constructor for exception uk.ac.cam.spectra.spectrasub.ConfigurationException
 
ConfigurationException(String) - Constructor for exception uk.ac.cam.spectra.spectrasub.ConfigurationException
 
ConfigurationException(Throwable) - Constructor for exception uk.ac.cam.spectra.spectrasub.ConfigurationException
 
ConfigurationException(String, Throwable) - Constructor for exception uk.ac.cam.spectra.spectrasub.ConfigurationException
 
ConfigurationListener - Class in uk.ac.cam.spectra.spectrasub.servlet
Looks for the workspace location by JNDI lookup or as a system property, then then adds the workspace location as a servlet context attribute.
ConfigurationListener() - Constructor for class uk.ac.cam.spectra.spectrasub.servlet.ConfigurationListener
 
ConfigureProfile - Class in uk.ac.cam.spectra.spectrasub.pages
 
ConfigureProfile() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.ConfigureProfile
 
ConfigureWorkspace - Class in uk.ac.cam.spectra.spectrasub.pages
The job of this page is to ask the user for a workspace directory, set it up and save the location into the context properties file and as a context attribute.
ConfigureWorkspace() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.ConfigureWorkspace
 
Constants - Class in uk.ac.cam.spectra.spectrasub
 
Constants() - Constructor for class uk.ac.cam.spectra.spectrasub.Constants
 
contextDestroyed(ServletContextEvent) - Method in class uk.ac.cam.spectra.spectrasub.servlet.ConfigurationListener
 
contextDestroyed(ServletContextEvent) - Method in class uk.ac.cam.spectra.spectrasub.servlet.SpectraContextLoaderListener
 
contextInitialized(ServletContextEvent) - Method in class uk.ac.cam.spectra.spectrasub.servlet.ConfigurationListener
 
contextInitialized(ServletContextEvent) - Method in class uk.ac.cam.spectra.spectrasub.servlet.SpectraContextLoaderListener
 
copyValues(Profile) - Method in class uk.ac.cam.spectra.spectrasub.Profile
Copy the properties of p onto this object
create(Profile) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
createArchiveFile(String) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
createDataFileHandle(DataPackage) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
createPackage() - Method in class uk.ac.cam.spectra.spectrasub.Profile
 
CrystAuthorFormlet - Class in uk.ac.cam.spectra.spectrasub.components
Crystallography author formlet, in which there is a crystallographer multiple input, and a co-constraint between the chemist and crystallography inputs.
CrystAuthorFormlet() - Constructor for class uk.ac.cam.spectra.spectrasub.components.CrystAuthorFormlet
 
customClicked() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigureProfile
 

D

DataError - Class in uk.ac.cam.spectra.spectrasub.pages
 
DataError() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.DataError
 
DataFile - Class in uk.ac.cam.spectra.spectrasub
Represents an uploaded data file.
DataFile() - Constructor for class uk.ac.cam.spectra.spectrasub.DataFile
 
DataPackage - Class in uk.ac.cam.spectra.spectrasub
Class used for building a package.
DataPackage() - Constructor for class uk.ac.cam.spectra.spectrasub.DataPackage
 
DataPackageDAO - Class in uk.ac.cam.spectra.spectrasub
 
DataPackageDAO() - Constructor for class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
DataPackageManager - Class in uk.ac.cam.spectra.spectrasub
Stateless object containing logic for handling processes.
DataPackageManager() - Constructor for class uk.ac.cam.spectra.spectrasub.DataPackageManager
 
DataWarning - Class in uk.ac.cam.spectra.spectrasub.pages
 
DataWarning() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
decode(String) - Static method in class uk.ac.cam.spectra.spectrasub.Name
 
DefaultAuthorFormlet - Class in uk.ac.cam.spectra.spectrasub.components
 
DefaultAuthorFormlet() - Constructor for class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
defaultConfiguration(File) - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
deposit(String) - Method in interface uk.ac.cam.spectra.spectrasub.Depositor
Deposit a package into some repository and return a reference to the deposited package.
deposit(String) - Method in class uk.ac.cam.spectra.spectrasub.LNIRestletDepositor
Deposits an internal package into an external LNI repository and returns the assigned Handle.
deposit(String) - Method in class uk.ac.cam.spectra.spectrasub.SimpleFSDepositor
 
Depositor - Interface in uk.ac.cam.spectra.spectrasub
Defines the contract for components that take data packages and deposit them in repositories.
done() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigurationComplete
 
doneNext() - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
doSubmit(IRequestCycle) - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
doSubmit(IRequestCycle) - Method in class uk.ac.cam.spectra.spectrasub.pages.Upload
 
DSpaceMETSPackager - Class in uk.ac.cam.spectra.spectrasub
A packager that builds a DSpace SIP profile METS package for the contents and uses zip to archive the files.
DSpaceMETSPackager() - Constructor for class uk.ac.cam.spectra.spectrasub.DSpaceMETSPackager
 

E

encode(Name) - Static method in class uk.ac.cam.spectra.spectrasub.Name
 
equals(Object) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
equals(Object) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
equals(Object) - Method in class uk.ac.cam.spectra.spectrasub.FileAndType
 
equals(Object) - Method in class uk.ac.cam.spectra.spectrasub.Name
 
EXISTING_PROFILES - Static variable in class uk.ac.cam.spectra.spectrasub.pages.ConfigureProfile
 
existingClicked() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigureProfile
 

F

FileAndType - Class in uk.ac.cam.spectra.spectrasub
Simple struct pairing a file handle with a mime type.
FileAndType() - Constructor for class uk.ac.cam.spectra.spectrasub.FileAndType
 
FileService - Class in uk.ac.cam.spectra.spectrasub.services
Handles file downloads in the "Confirm" stage of the upload process (a service is the equivalent of a straight servlet).
FileService() - Constructor for class uk.ac.cam.spectra.spectrasub.services.FileService
 
Finished - Class in uk.ac.cam.spectra.spectrasub.pages
 
Finished() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.Finished
 
Formlet - Interface in uk.ac.cam.spectra.spectrasub.components
Interface for components that contribute parts of the AddMetadata page

G

generateConfiguration() - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
generateMETS(DataPackage) - Method in class uk.ac.cam.spectra.spectrasub.DSpaceMETSPackager
 
getAdded() - Method in class uk.ac.cam.spectra.spectrasub.components.Border
 
getAddedDataFiles() - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getAddMetadata() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
The metadata page to use is configured into spring via the profile.
getAddMetadata() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getAddMetadata() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
getAddMetadata() - Method in class uk.ac.cam.spectra.spectrasub.pages.Upload
The metadata page to use is configured into spring via the profile.
getApplicationTitle() - Method in class uk.ac.cam.spectra.spectrasub.Configuration
 
getAuthEmail() - Method in class uk.ac.cam.spectra.spectrasub.LNIRestletDepositor
 
getAuthPass() - Method in class uk.ac.cam.spectra.spectrasub.LNIRestletDepositor
 
getAutoRelease() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getBooleanValue(MetadataProperty) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getBooleanValues(MetadataProperty) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getCancelled() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
getCheck() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
getChemicalFormula() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
getChemistName() - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
getChemists() - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
getClosedLicense() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getClosedUrl() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getCmlFile() - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getCmlType() - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
 
getCollectionHandle() - Method in class uk.ac.cam.spectra.spectrasub.LNIRestletDepositor
 
getCombine() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getCompoundClass() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
getCompoundClassOptions() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
getConfig() - Method in class uk.ac.cam.spectra.spectrasub.components.Border
 
getConfigProperties() - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
getConfigPropertiesFile() - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
getConfigPropertiesLocation() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigurationComplete
 
getConfiguration() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getConfigurationComplete() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigureProfile
 
getConfigureProfile() - Method in class uk.ac.cam.spectra.spectrasub.pages.BaseSPECTRaSubPage
 
getConfigureWorkspace() - Method in class uk.ac.cam.spectra.spectrasub.pages.BaseSPECTRaSubPage
 
getContents() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getContextPath() - Method in class uk.ac.cam.spectra.spectrasub.pages.BaseSPECTRaSubPage
 
getConvert() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getConvertOnWarning() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getCreateInChIOnWarning() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getCrystallographers() - Method in class uk.ac.cam.spectra.spectrasub.components.CrystAuthorFormlet
 
getCrystName() - Method in class uk.ac.cam.spectra.spectrasub.components.CrystAuthorFormlet
 
getDataError() - Method in class uk.ac.cam.spectra.spectrasub.pages.Upload
 
getDataFile() - Method in class uk.ac.cam.spectra.spectrasub.components.Border
Used in progress bar.
getDataFile() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataError
 
getDataFile() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
getDataFiles() - Method in class uk.ac.cam.spectra.spectrasub.Profile
 
getDataFileType() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getDataPackageDao() - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
 
getDataPackageDAO() - Method in class uk.ac.cam.spectra.spectrasub.LNIRestletDepositor
 
getDataPackageDAO() - Method in class uk.ac.cam.spectra.spectrasub.SimpleFSDepositor
 
getDataPackageManager() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getDataWarning() - Method in class uk.ac.cam.spectra.spectrasub.pages.Upload
 
getDateValue(DateProperty) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getDateValues(DateProperty) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getDelegate() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
getDepositor() - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
 
getDescription() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getDir() - Method in class uk.ac.cam.spectra.spectrasub.SimpleFSDepositor
 
getDisplayNoCMLWarning() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
getDisplayNoInChIWarning() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
getEmbargoApplies() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getEmbargoEncoder() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getEmbargoEnd() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getEmbargoMetadataEncoder() - Method in class uk.ac.cam.spectra.spectrasub.DSpaceMETSPackager
 
getEmbargoOptions() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
getEmbargoPeriod() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
getEmbargoRelease() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
True if embargo release is automatic
getError() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getError() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataError
 
getExceptionReporter() - Method in class uk.ac.cam.spectra.spectrasub.services.FileService
 
getExistingProfile() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigureProfile
 
getExperimentDate() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getExperimentRef() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getExtractMetadata() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getFile() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getFile() - Method in class uk.ac.cam.spectra.spectrasub.FileAndType
 
getFile() - Method in class uk.ac.cam.spectra.spectrasub.Profile
 
getFileAndType(String, String) - Method in class uk.ac.cam.spectra.spectrasub.DSpaceMETSPackager
 
getFileAndType(String, String) - Method in interface uk.ac.cam.spectra.spectrasub.Packager
 
getFilename() - Method in class uk.ac.cam.spectra.spectrasub.components.UploadMessage.UploadInfo
 
getFileName() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getFinished() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getHandle() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getHome() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigureWorkspace
 
getId() - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getId() - Method in exception uk.ac.cam.spectra.spectrasub.NotFoundException
 
getIdx() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
getInchi() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getInitials() - Method in class uk.ac.cam.spectra.spectrasub.Name
 
getInstitution() - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
getIntegerValue(IntegerProperty) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getIntegerValues(IntegerProperty) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getLink(boolean, Object) - Method in class uk.ac.cam.spectra.spectrasub.services.FileService
 
getLinkFactory() - Method in class uk.ac.cam.spectra.spectrasub.services.FileService
 
getLni() - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
 
getLniUrl() - Method in class uk.ac.cam.spectra.spectrasub.LNIRestletDepositor
 
getManifestMimeType() - Method in class uk.ac.cam.spectra.spectrasub.DSpaceMETSPackager
 
getManifestName(DataPackage) - Method in class uk.ac.cam.spectra.spectrasub.DSpaceMETSPackager
 
getManifestName(DataPackage) - Method in interface uk.ac.cam.spectra.spectrasub.Packager
Get the path of the manifest file inside the package.
getMd5sum() - Method in class uk.ac.cam.spectra.spectrasub.components.UploadMessage.UploadInfo
 
getMD5Sum() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getMetadata() - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getMetadataCombination() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getMetadataPage() - Method in class uk.ac.cam.spectra.spectrasub.Profile
 
getMimeType() - Method in class uk.ac.cam.spectra.spectrasub.FileAndType
 
getName() - Method in class uk.ac.cam.spectra.spectrasub.services.FileService
 
getNewChemist() - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
getNewCrystallographer() - Method in class uk.ac.cam.spectra.spectrasub.components.CrystAuthorFormlet
 
getNextUpload() - Method in class uk.ac.cam.spectra.spectrasub.components.Border
 
getNextUpload() - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getNormalizedURIString() - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
Hack required because file URIs seem to come out with either one / or three slashes after the file:.
getNoSubmit() - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
getNucleus1D() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getNucleus1DOptions() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getNucleus2DSelection() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getNucleusLabel() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getOpenLicense() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getOpenUrl() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getOtherUploads() - Method in class uk.ac.cam.spectra.spectrasub.components.Border
 
getPackage() - Method in class uk.ac.cam.spectra.spectrasub.components.Border
Used in the progress bar.
getPackage() - Method in class uk.ac.cam.spectra.spectrasub.pages.BaseSubmissionPage
Used in the progress bar.
getPackageDao() - Method in class uk.ac.cam.spectra.spectrasub.DSpaceMETSPackager
 
getPackageDao() - Method in class uk.ac.cam.spectra.spectrasub.pages.BaseSubmissionPage
 
getPackageDescription() - Method in class uk.ac.cam.spectra.spectrasub.Configuration
 
getPackageDescription() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getPackagedFile(String, String) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
getPackageId() - Method in class uk.ac.cam.spectra.spectrasub.pages.BaseSubmissionPage
 
getPackageId() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataError
 
getPackageManager() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
getPackageManager() - Method in class uk.ac.cam.spectra.spectrasub.pages.Upload
 
getPackager() - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
 
getPackager() - Method in class uk.ac.cam.spectra.spectrasub.services.FileService
 
getPackagingDirectory(String, boolean) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
getPhase() - Method in class uk.ac.cam.spectra.spectrasub.components.Border
 
getProfile() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
getProfile() - Method in class uk.ac.cam.spectra.spectrasub.pages.Upload
 
getProfile() - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
getPulseSequence2D() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getPulseSequence2DOptions() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getRemainingDataFiles() - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getResponse() - Method in class uk.ac.cam.spectra.spectrasub.services.FileService
 
getRights() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getSolvent() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getSolventOptions() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getSpectrumDimension() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getSpringBeanFile() - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
getSpringBeans() - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
getStorageBase() - Method in class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
getSupervisor() - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
getSurname() - Method in class uk.ac.cam.spectra.spectrasub.Name
 
getSystematicName() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
getTemperature() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getTemperatureOptions() - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
getType() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getType() - Method in class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
getUpload() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
getUpload() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigurationComplete
 
getUpload() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
getUpload() - Method in class uk.ac.cam.spectra.spectrasub.pages.Home
 
getUpload() - Method in class uk.ac.cam.spectra.spectrasub.pages.Upload
 
getUploadedFile() - Method in class uk.ac.cam.spectra.spectrasub.pages.Upload
Used to store the uploaded file
getUploadInfo() - Method in class uk.ac.cam.spectra.spectrasub.components.UploadMessage
 
getUploadInfo() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
getUploadInfo() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataError
 
getUploadInfo() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
getUploadInfo() - Method in class uk.ac.cam.spectra.spectrasub.pages.Upload
 
getUri() - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getValidation() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getValidation() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataError
 
getValue(MetadataProperty) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getValues(MetadataProperty) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
getWarning() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
getWarning() - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
getWebContext() - Method in class uk.ac.cam.spectra.spectrasub.pages.BaseSPECTRaSubPage
 
getWebContext() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigurationComplete
 
getWebContext() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigureProfile
 
getWebContext() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigureWorkspace
 
getWebRequest() - Method in class uk.ac.cam.spectra.spectrasub.pages.BaseSPECTRaSubPage
 
getWorkDir() - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
getWorkspaceLocation() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigureWorkspace
 

H

hashCode() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
hashCode() - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
hashCode() - Method in class uk.ac.cam.spectra.spectrasub.FileAndType
 
hashCode() - Method in class uk.ac.cam.spectra.spectrasub.Name
 
Home - Class in uk.ac.cam.spectra.spectrasub.pages
 
Home() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.Home
 

I

init() - Method in class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
init() - Method in class uk.ac.cam.spectra.spectrasub.Profile
 
init() - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
isBlank() - Method in class uk.ac.cam.spectra.spectrasub.Name
 
isEmpty(List<Name>) - Static method in class uk.ac.cam.spectra.spectrasub.Name
 

L

LNIRestletDepositor - Class in uk.ac.cam.spectra.spectrasub
Implements package deposition using the restlet.org API.
LNIRestletDepositor() - Constructor for class uk.ac.cam.spectra.spectrasub.LNIRestletDepositor
 
load(String) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
loadPackage() - Method in class uk.ac.cam.spectra.spectrasub.pages.BaseSubmissionPage
 
LOG - Static variable in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
LOG - Static variable in class uk.ac.cam.spectra.spectrasub.pages.BaseSPECTRaSubPage
 
LOG - Static variable in class uk.ac.cam.spectra.spectrasub.servlet.ConfigurationListener
 

N

Name - Class in uk.ac.cam.spectra.spectrasub
Utility class for structuring names as initials then surname.
Name() - Constructor for class uk.ac.cam.spectra.spectrasub.Name
 
nextData(String, InputStream, String) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
Saves data from an input stream into the next upload slot of the referenced package, performs validation, metadata extraction and any necessary file conversions.
NMRExperimentMetadata - Class in uk.ac.cam.spectra.spectrasub.components
Needs to implement an interface (to be defined) that allows the container page (AddMetadata) to get a Model from the metadata entered here.
NMRExperimentMetadata() - Constructor for class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
NotFoundException - Exception in uk.ac.cam.spectra.spectrasub
 
NotFoundException() - Constructor for exception uk.ac.cam.spectra.spectrasub.NotFoundException
 
NotFoundException(String, Throwable) - Constructor for exception uk.ac.cam.spectra.spectrasub.NotFoundException
 
NotFoundException(String, String) - Constructor for exception uk.ac.cam.spectra.spectrasub.NotFoundException
 
NotFoundException(Throwable) - Constructor for exception uk.ac.cam.spectra.spectrasub.NotFoundException
 
NUCLEUS_2D_OPTION_LABELS - Static variable in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 

P

Packager - Interface in uk.ac.cam.spectra.spectrasub
Interface for components that encode metadata, write manifests and bundle resources into archives.
packAndGo(String) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
 
pageBeginRender(PageEvent) - Method in class uk.ac.cam.spectra.spectrasub.components.CrystAuthorFormlet
 
pageBeginRender(PageEvent) - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
pageBeginRender(PageEvent) - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
pageBeginRender(PageEvent) - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
pageBeginRender(PageEvent) - Method in class uk.ac.cam.spectra.spectrasub.pages.BaseSubmissionPage
 
pageBeginRender(PageEvent) - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
pageBeginRender(PageEvent) - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
pageBeginRender(PageEvent) - Method in class uk.ac.cam.spectra.spectrasub.pages.Home
 
pageBeginRender(PageEvent) - Method in class uk.ac.cam.spectra.spectrasub.pages.Upload
 
phaseIs(String) - Method in class uk.ac.cam.spectra.spectrasub.components.Border
 
PHASES - Static variable in class uk.ac.cam.spectra.spectrasub.components.Border
 
Profile - Class in uk.ac.cam.spectra.spectrasub
Describes a packaging process, what datafiles are needed, which are to be converted to CML, where the main InChI comes from, what metadata components are required and so on.
Profile() - Constructor for class uk.ac.cam.spectra.spectrasub.Profile
 
Profile2BeanConfig - Class in uk.ac.cam.spectra.spectrasub
Dynamically generates a spring config file for a given workspace and profile.
Profile2BeanConfig() - Constructor for class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
PROFILE_FILENAME - Static variable in class uk.ac.cam.spectra.spectrasub.Constants
 
PROPERTIES_ATTRIBUTE - Static variable in class uk.ac.cam.spectra.spectrasub.Constants
 

Q

quit() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 

R

reedit() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 

S

save(DataPackage) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
service(IRequestCycle) - Method in class uk.ac.cam.spectra.spectrasub.services.FileService
 
setAddedDataFiles(List<DataFile>) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
setApplicationTitle(String) - Method in class uk.ac.cam.spectra.spectrasub.Configuration
 
setAuthEmail(String) - Method in class uk.ac.cam.spectra.spectrasub.LNIRestletDepositor
 
setAuthPass(String) - Method in class uk.ac.cam.spectra.spectrasub.LNIRestletDepositor
 
setAutoRelease(boolean) - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
setCancelled(boolean) - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
setChemicalFormula(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
setChemists(List<Name>) - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
setClosedLicense(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
setClosedUrl(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
setCmlFile(DataFile) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
setCmlType(CMLType) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
 
setCollectionHandle(String) - Method in class uk.ac.cam.spectra.spectrasub.LNIRestletDepositor
 
setCompoundClass(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
setConfigPropertiesFile(File) - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
setContents(List<String>) - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
setConvert(boolean) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setConvertOnWarning(boolean) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setCreateInChIOnWarning(boolean) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setCrystallographers(List<Name>) - Method in class uk.ac.cam.spectra.spectrasub.components.CrystAuthorFormlet
 
setDataFile(DataFile) - Method in class uk.ac.cam.spectra.spectrasub.pages.DataError
 
setDataFile(DataFile) - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
setDataFileType(DataFileType) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setDataPackageDao(DataPackageDAO) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
 
setDataPackageDAO(DataPackageDAO) - Method in class uk.ac.cam.spectra.spectrasub.LNIRestletDepositor
 
setDataPackageDAO(DataPackageDAO) - Method in class uk.ac.cam.spectra.spectrasub.SimpleFSDepositor
 
setDepositor(Depositor) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
 
setDescription(String) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setDir(String) - Method in class uk.ac.cam.spectra.spectrasub.SimpleFSDepositor
 
setEmbargoApplies(boolean) - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
setEmbargoEnd(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
setEmbargoMetadataEncoder(EmbargoMetadataEncoder) - Method in class uk.ac.cam.spectra.spectrasub.DSpaceMETSPackager
 
setEmbargoPeriod(Integer) - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
setEmbargoRelease(boolean) - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
setError(String) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setExceptionReporter(RequestExceptionReporter) - Method in class uk.ac.cam.spectra.spectrasub.services.FileService
 
setExperimentDate(Date) - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
setExperimentRef(String) - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
setExtractMetadata(boolean) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setFile(File) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setFile(File) - Method in class uk.ac.cam.spectra.spectrasub.FileAndType
 
setFile(String) - Method in class uk.ac.cam.spectra.spectrasub.Profile
 
setFilename(String) - Method in class uk.ac.cam.spectra.spectrasub.components.UploadMessage.UploadInfo
 
setFileName(String) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setHandle(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
setId(String) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
setId(String) - Method in exception uk.ac.cam.spectra.spectrasub.NotFoundException
 
setInchi(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
setInitials(String) - Method in class uk.ac.cam.spectra.spectrasub.Name
 
setInstitution(String) - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
setLinkFactory(LinkFactory) - Method in class uk.ac.cam.spectra.spectrasub.services.FileService
 
setLni(LNI) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
 
setLniUrl(String) - Method in class uk.ac.cam.spectra.spectrasub.LNIRestletDepositor
 
setMd5sum(String) - Method in class uk.ac.cam.spectra.spectrasub.components.UploadMessage.UploadInfo
 
setMetadata(Model) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
setMetadataCombination(String) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setMetadataPage(String) - Method in class uk.ac.cam.spectra.spectrasub.Profile
 
setMimeType(String) - Method in class uk.ac.cam.spectra.spectrasub.FileAndType
 
setNewChemist(Name) - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
setNewCrystallographer(Name) - Method in class uk.ac.cam.spectra.spectrasub.components.CrystAuthorFormlet
 
setNewURL(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.Finished
 
setNoSubmit(String) - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
setNucleus1D(String) - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
setNucleus2DSelection(boolean[]) - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
setOpenLicense(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
setOpenUrl(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
setPackage(DataPackage) - Method in class uk.ac.cam.spectra.spectrasub.pages.BaseSubmissionPage
Used in the progress bar.
setPackageDao(DataPackageDAO) - Method in class uk.ac.cam.spectra.spectrasub.DSpaceMETSPackager
 
setPackageDescription(String) - Method in class uk.ac.cam.spectra.spectrasub.Configuration
 
setPackageId(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.BaseSubmissionPage
 
setPackageId(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.DataError
 
setPackager(Packager) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageManager
 
setPackager(Packager) - Method in class uk.ac.cam.spectra.spectrasub.services.FileService
 
setProfile(File) - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
setPulseSequence2D(String) - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
setRemainingDataFiles(List<DataFile>) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
setResponse(WebResponse) - Method in class uk.ac.cam.spectra.spectrasub.services.FileService
 
setRights(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
setSolvent(String) - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
setSpectrumDimension(Integer) - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
setSpringBeanFile(File) - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
setStorageBase(String) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
setSupervisor(Name) - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
setSurname(String) - Method in class uk.ac.cam.spectra.spectrasub.Name
 
setSystematicName(String) - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
setTemperature(String) - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
setType(String) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setType(Map<String, DataFileType>) - Method in class uk.ac.cam.spectra.spectrasub.DataPackageDAO
 
setUploadInfo(UploadMessage.UploadInfo) - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
setUploadInfo(UploadMessage.UploadInfo) - Method in class uk.ac.cam.spectra.spectrasub.pages.DataError
 
setUploadInfo(UploadMessage.UploadInfo) - Method in class uk.ac.cam.spectra.spectrasub.pages.DataWarning
 
setUploadInfo(UploadMessage.UploadInfo) - Method in class uk.ac.cam.spectra.spectrasub.pages.Upload
 
setupPage(DataPackage) - Method in class uk.ac.cam.spectra.spectrasub.components.CrystAuthorFormlet
 
setupPage(DataPackage) - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
setupPage(DataPackage) - Method in interface uk.ac.cam.spectra.spectrasub.components.Formlet
This method gets called from the page begin render method when the form is notrewinding.
setupPage(DataPackage) - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
setUri(URI) - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
setValidation(Validation) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setValidation(Validation) - Method in class uk.ac.cam.spectra.spectrasub.pages.DataError
 
setWarning(String) - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
setWorkDir(File) - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
SimpleFSDepositor - Class in uk.ac.cam.spectra.spectrasub
Simple component that allows packages that are Deposited to be placed in a special folder in the filesystem, rather than sent to a repository.
SimpleFSDepositor() - Constructor for class uk.ac.cam.spectra.spectrasub.SimpleFSDepositor
 
somethingClicked() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
This required to make sure custom validation gets performed as well as the built in validation when there are errors.
SpectraContextLoader - Class in uk.ac.cam.spectra.spectrasub.servlet
If a valid workspace has been detected and set as a servlet context attribute this component adds it to the config path for the spring application context, otherwise just creates the default context.
SpectraContextLoader() - Constructor for class uk.ac.cam.spectra.spectrasub.servlet.SpectraContextLoader
 
SpectraContextLoaderListener - Class in uk.ac.cam.spectra.spectrasub.servlet
Reboots the spring context, regenerating spring-beans.xml if necessary, modifying the path and restarting the application Context.
SpectraContextLoaderListener() - Constructor for class uk.ac.cam.spectra.spectrasub.servlet.SpectraContextLoaderListener
 
SPRING_CONFIG_FILENAME - Static variable in class uk.ac.cam.spectra.spectrasub.Constants
 
SPRINGCONFIG_GENERATOR_BEAN_ID - Static variable in class uk.ac.cam.spectra.spectrasub.Constants
 
styleClass(String) - Method in class uk.ac.cam.spectra.spectrasub.components.Border
upload,metadata,check,finished
submit() - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadata
 
submit() - Method in class uk.ac.cam.spectra.spectrasub.pages.Check
 
submit() - Method in class uk.ac.cam.spectra.spectrasub.pages.ConfigureWorkspace
 

T

toString() - Method in class uk.ac.cam.spectra.spectrasub.components.UploadMessage.UploadInfo
 
toString() - Method in class uk.ac.cam.spectra.spectrasub.DataFile
 
toString() - Method in class uk.ac.cam.spectra.spectrasub.DataPackage
 
toString() - Method in class uk.ac.cam.spectra.spectrasub.Name
 
toString() - Method in class uk.ac.cam.spectra.spectrasub.Profile
 
transcodeAndSerialize(DataPackage, File) - Method in class uk.ac.cam.spectra.spectrasub.DSpaceMETSPackager
Convert the package's RDF metadata into METS.
transcodeAndSerialize(DataPackage, File) - Method in interface uk.ac.cam.spectra.spectrasub.Packager
Transcode the metadata of package into the final manifest format, and archive (by an implementation specific method) the entire package contents into the destination file.
trim(List<Name>) - Static method in class uk.ac.cam.spectra.spectrasub.Name
 

U

uk.ac.cam.spectra.spectrasub - package uk.ac.cam.spectra.spectrasub
 
uk.ac.cam.spectra.spectrasub.components - package uk.ac.cam.spectra.spectrasub.components
 
uk.ac.cam.spectra.spectrasub.pages - package uk.ac.cam.spectra.spectrasub.pages
 
uk.ac.cam.spectra.spectrasub.services - package uk.ac.cam.spectra.spectrasub.services
 
uk.ac.cam.spectra.spectrasub.servlet - package uk.ac.cam.spectra.spectrasub.servlet
 
Upload - Class in uk.ac.cam.spectra.spectrasub.pages
 
Upload() - Constructor for class uk.ac.cam.spectra.spectrasub.pages.Upload
 
UploadMessage - Class in uk.ac.cam.spectra.spectrasub.components
 
UploadMessage() - Constructor for class uk.ac.cam.spectra.spectrasub.components.UploadMessage
 
UploadMessage.UploadInfo - Class in uk.ac.cam.spectra.spectrasub.components
 
UploadMessage.UploadInfo() - Constructor for class uk.ac.cam.spectra.spectrasub.components.UploadMessage.UploadInfo
 

V

validate(IValidationDelegate) - Method in class uk.ac.cam.spectra.spectrasub.components.CrystAuthorFormlet
 
validate(IValidationDelegate) - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
validate(IValidationDelegate) - Method in interface uk.ac.cam.spectra.spectrasub.components.Formlet
Validate formlet inputs.
validate(IValidationDelegate) - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 

W

WORKSPACE_ATTRIBUTE - Static variable in class uk.ac.cam.spectra.spectrasub.Constants
 
writeConfiguration() - Method in class uk.ac.cam.spectra.spectrasub.Profile2BeanConfig
 
writeLabelAttributes(IMarkupWriter, IRequestCycle, IFormComponent) - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadataValidationDelegate
 
writeLabelPrefix(IFormComponent, IMarkupWriter, IRequestCycle) - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadataValidationDelegate
 
writeLabelSuffix(IFormComponent, IMarkupWriter, IRequestCycle) - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadataValidationDelegate
 
writeMetadata(Resource) - Method in class uk.ac.cam.spectra.spectrasub.components.CrystAuthorFormlet
 
writeMetadata(Resource) - Method in class uk.ac.cam.spectra.spectrasub.components.DefaultAuthorFormlet
 
writeMetadata(Resource) - Method in interface uk.ac.cam.spectra.spectrasub.components.Formlet
Write form data out as RDF metadata.
writeMetadata(Resource) - Method in class uk.ac.cam.spectra.spectrasub.components.NMRExperimentMetadata
 
writeSuffix(IMarkupWriter, IRequestCycle, IFormComponent, IValidator) - Method in class uk.ac.cam.spectra.spectrasub.pages.AddMetadataValidationDelegate
 

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